Adrian Fritz

Hi Emilio, with "buffer" I meant that if you calculate some value for the number of bases, it is probably best to add something like 50% more, just to be...

The entry from the `names.dmp` is the one CAMISIM stored in the temporary files (i.e. `/tmp/tmpmujfkb4x/NCBI/names.dmp`)? Unfortunately, internally CAMISIM sometimes falls back to an older taxonomy version which might not...

Thank you very much for the information! I have seen similar things happen and thought I fixed all these cases, but seems I have to get back to the drawing...

Sounds like a good idea - and any help is greatly appreciated!

Hm, that is strange, are you sure that these values fit _exactly_? The difference between S. bongori and S. enterica in genome size is only ~10%, so instead of 10%...

I think `grep -c` on the readmappings file should be fine. I tried the same on a few of my datasets and the results were as I expected it (i.e....

I will have to look into it, but I have the strong suspicion that this is a bug in CAMISIM when using `wgsim`. Could you run the same data set...

Okay, that is good to hear. It is still a bug/inconsistency for `wgsim` (and likely for `Nanosim` as well) which I will fix. If you can use your data regardless...

Hi Hazem, thank you for your report, that obviously should not be like that. I will investigate and come back to you and hopefully there is a quick fix. Regarding...

Thank you for the kind words! If CAMISIM is set up such that it simulates strains, it will first do so. The read simulation process then is independent of whether...