Adrian Fritz

Hm, that about NanoSim `3.0` is unfortunate, it didn't happen to me, but I will try to find out what is happening, similarly for the anonymization step. Do you have...

Ah, yeah the size is a problem. Since NanoSim requires the number of reads as input and CAMISIM the dataset size, there has to be a conversion from size ->...

It seems like there is still some bug somewhere in NanoSim/the length calculation of the reads, so some CIGARs were not correct after all, causing samtools to sometimes crash (a...

Interesting, that never happened to me, even when creating the rather large CAMI datasets with >500 genomes. `line 99` unfortunately only refers to the line in the main script, i.e....

Could you run CAMISIM using the `-debug` flag, so I can have a more detailed look where the error comes from?

Thank you, yes that indeed helped a lot. It seems like this issue and #129 are linked after all. I implemented the solution proposed there and at least on my...

Unfortunately the mode to continue from a certain point in the simulation is nonfunctional since a while, so you would need to restart CAMISIM. There have been some issues with...

Okay, you could try to remove these and see if the problem persists - sorry for the inconvenience

Hi Emilio, that is definitely possible, but it might require some manual work beforehand. As far as I understood you want to use CAMISIM's option to generate genome sequences in...

Hi, with this additional information we are getting closer, there still might be some variables though ;) If you have the exact composition (but not a BIOM profile), then I...