Adrian Fritz

You are right, there should be a description for every read simulator how to modify the config accordingly, and the way to do this for the wgsim simulator is particularly...

Error-free can only be done with `wgsim` (see my comment above for this). It should not make a difference whether you use `ART` or `wgsim` here. For using the custom...

Hi, unfortunately the simulation from CAMI-format .profile files is not functional yet. It is on my todo list, but I cannot give a date as to when it will be...

Oh sorry, your answer must have gotten lost in time. It probably is too late, but the BIOM format is generated by (some) 16S profilers such as [QIIME](http://qiime.org/documentation/biom_format.html)

Optimally there would be a prompt whether to build a new database or use an existing pre-built one. Providing databases which become outdated pretty quick comes with its own set...

Hi, thank you for your interest in CAMISIM! There are some known problems regarding NanoSim in the master branch and I have taken efforts to fix them. You can test...

I understand and that seems reasonable to me. The `python3` branch should still support the older version of NanoSim, the goal is that it will support both versions.

The `nanosim3` command line is thought for NanoSim 3.0, I might have introduced errors for the older NanoSim version, I will investigate. The errors in the CIGAR are an error...

Ah oh no, I am also confused, the update for NanoSim 2.5 was only introduced on the `nanosim` branch - but as you noticed, that branch is relatively old and...

Even though I think that if `2.5.0` finished without errors your results probably are usable, I would use the latest NanoSim `3.0` if it works. The model used in `1.2.0`...