ecephys_spike_sorting

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PCmetrics not being calculated for some clusters

5

Hi guys, I was checking out the function on the metrics module that calculates the Principal Component related metrics, from which the next printscreen was taken:  The condition in...

JRicardo24

PCmetrics values are not constant for multiple runs

3

Hello guys, is it normal that when we run the **metrics module**, on the exactly same dataset, that the values for **isolation distance**, **l_ratio**, **d_prime** and the 2 **nearest_neighbours** metrics...

JRicardo24

Bumps [jinja2](https://github.com/pallets/jinja) from 2.11.2 to 3.1.3. Release notes Sourced from jinja2's releases. 3.1.3 This is a fix release for the 3.1.x feature branch. Fix for GHSA-h5c8-rqwp-cp95. You are affected if...

dependabot[bot]

mean waveforms linear regression error

1

Hello, I'm trying to run the mean_waveforms module on KS3 data but keep getting an error of 'Cannot calculate a linear regression if all x values are identical' . How...

rjp109

Executable for median subtraction for MacOS

1

Hi, Is there a MacOS version of the compiled executable for the median subtraction module? I found a windows and linux version in the closed issues (#50) but not a...

jazlynntan

Why are mean_waveforms worise by using the temp_wh.dat as row data than .bin file?

2

Hi! I saw that the continous data can be .bin file or .dat file in these modules. As the temp_wh.dat file created by kilosort3 is whitened and high pass filtered,...

PathwayinGithub

Questions regarding create_input_json.py setup

1

Hello! I am seeking assistance to understand how to edit _create_input_json.py_. I have edited lines 17-23 of the code below, this is a recreation of how I filled in these...

petesass