deepinterpolation
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AllenInstitute
Hello, What versions of python would currently be supported please? The readme suggests 3.7, but that's now EOL. Can one use supported Python releases (3.8+)? It'll be good to note...
Hi Again, I received the following error: AttributeError: module 'deepinterpolation.generator_collection' has no attribute 'OnePGenerator' Best, Fatih
Hi! I have been using deep interpolation on our large-scale calcium imaging movies, but it seems that even with a state-of-the-art GPU (3090 Ti), inference step takes around 1.5 days...
Based on a [previous discussion](https://github.com/AllenInstitute/deepinterpolation/pull/93#discussion_r1131700454), we agreed that mlflow should be deprecated The test has been removed. Further work needs to be done to remove all lines corresponding to this.
Hello, I'm reprocessing a few dozen 2photon acquisitions and performing fine-tuning on the Ai93 model for each acquisition. We've tested it out and determined that we're going to need to...
When I run fine_tuning with the following settings: finetuning_params["learning_rate"] = 0.001 finetuning_params["initial_learning_rate"] = 0.001 finetuning_params["apply_learning_decay"] = 1 finetuning_params["epochs_drop"] = 2 I get the following error File "/home/bijanadmin/DeepinterpolationProject/test_deepinterp_minibatches.py", line 262, in...
Hi Jerome, I am running into an error running a modified version of examples/GoogleColab_example_Ophys__Finetuning_and_Inference_Workshop.ipynb where I've specified the following parameters: finetuning_params["use_multiprocessing"] = False finetuning_params["caching_validation"] = False The error I get...
When starting training on windows 10, tensorflow 2.4.4 OverflowError: cannot serialize a bytes object larger than 4 GiB error appears in multiprocessing/reduction.py (line 60) not really knowing what I am...
Looking at this block of code https://github.com/AllenInstitute/deepinterpolation/blob/master/deepinterpolation/inferrence_collection.py#L201-L247 It looks like, when running an inference job, the module opens the output HDF5 file and leaves that file open during the entire...
