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Single-compartment Bionet cells
Hey Kael et al.! Firstly, thanks for doing an incredible amount of work on developing BMTK and the SONATA standard!
I'm trying to test-run BMTK on simple, single-compartment neurons, but after some digging into the code of both BMTK and BBP's libSONATA, it seems like this model_type
(single_compartment
) is either not yet or will not be implemented. Are there concrete plans to implement the single_compartment
model_type
, or is there an official roadmap for the future of BMTK in general? I also noticed that there may be plans to implement a model_type
called point_soma
, but I'm not sure if that's only meant to work with Pointnet/NEST instead of Bionet/NEURON.
I also tried using the default model_type
of biophysical
and then just using a different NEURON/hoc model_template
, but I couldn't get this to work. I'm not sure, but from reading the code, it seems like which model_template
is allowed are hardcoded, rather than being able to provide your own cell.hoc
template -- am I right that the model_template
s are hardcoded for each model_type
?
Thanks, Austin