AllenSDK

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We've learned a lot about different ways to handle timestamps over the course of the VBN release. We should record that in a document somewhere. Relevant tickets are #2370 #2337...

danielsf

This epic is for the second iteration of the VBN 2022 release. We will attach issues that we know are not a part of the initial data release to this...

danielsf

Once Kael Dai delivers to us the Dockerfile that builds the environment they want, we need to create a prototype instance of the AWS environment that Anton Arkhipov, Kael, and...

danielsf

Anton Arkhipov and Kael Dai will be hosting a [modeling workshop](https://alleninstitute.org/what-we-do/brain-science/events-training/2022-modeling-workshop/) on July 25 and 26. They need us to stand up an AWS environment to allow the participants to...

danielsf

The SyncFile data file implemented in `brain_observatory/behavior/data_files` does some very VBO-specific processing on instantiation. Now that we are supporting different projects with different ways of handling the sync files, we...

danielsf

Do not use monitor_delay in timestamps for running speed

6

As a result of PR #2256, the `StimulusTimestamps` data object in `allensdk/brain_observatory/behavior/data_objects` is always created with a value for `monitor_delay`. While this is appropriate for timestamps associated with stimuli that...

danielsf

After running ``` from allensdk.core.reference_space_cache import ReferenceSpaceCache reference_space_key = 'annotation/ccf_2017' resolution = 10 rspc = ReferenceSpaceCache(resolution, reference_space_key, manifest='manifest.json') # ID 1 is the adult mouse structure graph tree = rspc.get_structure_tree(structure_graph_id=1)...

kgj1234

There is documentation lacking for much of the probes data. The following are the fields which need more documentation **Channel** - valid_data - local_index - probe_vertical_position - probe_horizontal_position - manual_structure_acronym...

aamster

This is mostly a capstone issue meant to represent the completion of the spring 2022 VBN release List of sessions to be uploaded can be found in ecephys_etl_pipelines issue 38...

danielsf

Requesting allensdk on conda

7

Hi there i am requesting to package allensdk to https://anaconda.org/ using https://conda-forge.org/ if there was no one can do it i will like to contribute.

umarbrowser