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AllenInstitute
code for reading and processing Allen Institute for Brain Science data
During the 2022 VBN data-release push, several ecephys sessions were discovered that uploaded to LIMS in an incomplete state. The units stored in the LIMS ecephys_units table did not map...
Kael Dai is going to give us a Dockerfile defining the cloud computing environment they want us to provide for students at the BMTK 2022 workshop. We first need to...
**Tasks** - [x] Write basic data access notebook for VBN (basically copied from the one we wrote for VBO) - [x] Get example data analysis notebooks from scientists - [x]...
The learning-mFISH group needs (at least) Suite2P segmentation to be running on their data in LIMS in order to do their prototype investigation. This epic exists to encapsulate all of...
We made a lot of changes to the NWB-generation code in summer 2021, assuming there would be a new version of the VBO data release. The changes happened; the release...
Epic to track issues related to a potential update of the VBO 2021 data release
As with the 2021 release of Visual Behavior ophys data, the April release of Visual Behavior Neuropixels data will have two types of files: NWB files with Neuropixels (ecephys) data...
We know we need to add "behavior tracking" fields to the ecephys NWB files as a part of v2 VBN data release. We do not know what those fields are....
As part of version 2 of the VBN data release, we are going to need to create NWB files for the LFP ("local field potential") data. There is, nominally, already...
Talk to Shawn and Corbett about what needs to be added to the VBN release for version 2. Things we know about are - LFP NWB files - Behavior-only NWB...
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code for reading and processing Allen Institute for Brain Science data