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VBO documentation

2

An external user is having trouble accessing AllenSDK documentation for VBO linked to on the main VBO documentation page on read the docs. [Here](https://community.brain-map.org/t/is-there-a-public-facing-version-of-the-allensdk-methods-description-mentioned-on-the-read-the-docs-website/1610) is the issue. The linked documentation...

aamster

'change_time_no_display_delay' key in trial table breaks session.get_rolling_performance_df() method

3

**Describe the bug** The session.get_rolling_performance_df() method does not work in the vbn_2022_dev branch **To Reproduce** from pynwb import NWBHDF5IO from allensdk.brain_observatory.ecephys.behavior_ecephys_session import ( BehaviorEcephysSession) path=r"\\allen\programs\mindscope\workgroups\np-behavior\vbn_data_release\vbn_s3_cache\visual-behavior-neuropixels-0.1.0\ecephys_sessions\ecephys_session_1044594870.nwb" with NWBHDF5IO(path, 'r', load_namespaces=True) as...

egmcbride

Missing session_types from cache.get_behavior_

4

**Describe the bug** There are 8 behavior sessions that show NaN in the `session_type`. Might be related to a previous issue: https://github.com/AllenInstitute/AllenSDK/issues/1772 **To Reproduce** ``` import allensdk from allensdk.brain_observatory.behavior.behavior_project_cache import...

jkim0731

Use pickle file for session_type instead of mtrain

6

Currently, the BehaviorProjectLimsAPI uses [mtrain](https://github.com/AllenInstitute/AllenSDK/blob/351850c72fb7119b7e3de5f9fade93d58c7ec58a/allensdk/brain_observatory/behavior/behavior_project_cache/project_apis/data_io/behavior_project_lims_api.py#L265) to pull session type for behavior-only sessions. For behavior-ophys, it uses the value in the LIMS DB. Mtrain has incorrect values for several sessions. These...

aamster

https://github.com/AllenInstitute/AllenSDK/issues/2486 After the linked issue, we have to update the metadata tables.

morriscb

**Describe the bug** We are trying to read NWB files from the Allen Brain Atlas. E.g.: https://celltypes.brain-map.org/experiment/electrophysiology/643575207 Download URL: https://celltypes.brain-map.org/api/v2/well_known_file_download/742807112 We are having problems reading the file with PyNWB and...

appukuttan-shailesh

Release updated VBO dataset

2

**Tasks** - [ ] Generate new metadata and NWB files for VBO released-sessions using something like `VisualBehaviorOphysProjectCache.from_lims(data_release_date=['2021-03-25', '2021-08-12'])` - [ ] Perform whatever validation Marina and company wanted done on...

danielsf

**Describe the bug** The current VBN units metadata table has columns for the anterior-posterior CCF coord and the dorsal-ventral coord, but not the left-right coord. **To Reproduce** I used the...

corbennett

loading behavior_ophys_experiment is very slow

23

**Describe the bug** Recently loading the `behavior_ophys_experiment` object using the code below has become extremely slow. It used to take a few seconds, now it can take on the order...

matchings

Mesoscope uploads should track Face movie

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Tracked in a JIRA issue [DT-3381](https://alleninstitute-brainscience.atlassian.net/browse/DT-3381) This is a simple LIMS strategy modification. The Mesoscope session upload (MesoscopeUploadStrategy) should track a well known file of type RawFaceTrackingVideo for the file...

wbwakeman