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Integer to NaN error with download_and_train.py

Open mattpharris opened this issue 4 years ago • 1 comments

Description

Trying to successfully install+test the latest version of the repo.

Initially, I was hitting versioning errors if I just set the environment using: conda create --name <my_env> python=3.6

So, I found the following commands allowed me to proceed without any errors: conda create --name <my_env> python=3.6 python-dateutil=2.8.0 tifffile=0.15.1 scikit-image git clone https://github.com/AllenCellModeling/pytorch_fnet.git cd pytorch_fnet pip install . conda install quilt3 #found this wasn't installed with the previous line... export MKL_THREADING_LAYER=GNU #my solution to the previous issue @Li-En-Good "Could not train the model on AWS #173"

After getting no errors from the above code, cd examples python download_and_train.py

The manifest downloads from quilt successfully, but I continue with the following NaN-to-integer error: image

Any advice?

Expected Behavior

python download_and_train.py runs without errors.

Reproduction

Environment

Yes, I do have an NVIDIA graphics card

mattpharris avatar Jun 03 '20 15:06 mattpharris

See this solution

alxndrkalinin avatar Jul 16 '20 10:07 alxndrkalinin