galig
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AlgoLab
A graph aligner
I installed python3 biopython pysam gffutils pandas cmake samtools zlib in a newly created conda environment. ``` conda create -n asgal -y conda activate asgal conda install python=3.6 -y conda...
I found that ASGAL generated only the number of supporting reads for each of the splicing events. Could you please let me know (with code if possible) how to compute...
Hello everyone, I have been using ASGAL for some time now and I'm very content with the obtained results, congrats on the implementation. Lately I have been working with samples...
It would a nice feature to allow user to define a temporary directory and use it when running samtools and salmon See #15
Hi, I am using ASGAL tool to find MET14 deletion and EGFR variation events in the samples. I am running genome wide analysis for these two genes. ASGAL run is...
I installed Asgal in the virtual environment on shared resources HPC using python 3.8 and installed all the packages required using pip install. On Asgal gives error of not finding...
HI, I encountered the following error when testing with your example data after installation. Do you know what caused the issue and is it caused by inproper installation? Thanks! File...
Hi, I am currently working on RNA seq data (Paired end), of human sample, I need to check the alternative splicing event of a specific gene "NEK1" in the sample...
Hello, when building the Docker image I get the following error. Steps to reproduce: ``` wget https://github.com/AlgoLab/galig/releases/tag/v1.1.7 tar xzvf galig-1.1.7.tar.gz cd galig-1.1.7/docker/ docker build -t galig . ``` Part of...
