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Published 20 hours ago • verified publisher icon AlexandrovLab

SigProfilerMatrixGenerator 1.2.26 is still broken: binomtest does not take a parameter "x"

Open toddajohnson opened this issue 1 year ago • 1 comments
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I just installed and ran SigProfilerMatrixGenerator 1.2.26, and it fails with an error that binomtest does not take a parameter x. The points in MutationMatrixGenerator.py all use binomtest(x=. According to https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.binomtest.html, binomtest takes a parameter k for the number of successes.

toddajohnson avatar Jun 01 '24 17:06 toddajohnson

Hi @toddajohnson,

Thanks for filling out and issue. Apologies for the oversight with the v1.2.26 update. We will include a patch for this in the next update.

Changes being made are on branch i181.

Thanks again!

mdbarnesUCSD avatar Jun 21 '24 20:06 mdbarnesUCSD