SigProfilerAssignment
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[Question] Difference between denovo_fit and cosmic_fit
When using cosmic_fit
to assign mutational signatures to my samples, I identified SBS1, SBS5, and SBS19.
I then extracted these three signatures to refit using denovo_fit
. However, I noticed differences in the distribution of these signatures. For example, SBS19 appeared in samples where it had not been detected previously with cosmic_fit
.
Is this discrepancy due to differences in the processing methods of the two functions? If I want to compare the changes in fit after adding some signatures, should I compare the results of two denovo_fit
runs (before and after adding the signatures), or should I compare the results of denovo_fit
(after adding the signatures) with cosmic_fit
?
Looking forward to your reply!