Alexander Pico

We have edge bundling, but we are missing the removal of edge bends introduced via bundling. These bends can be problematic, so the removal method is almost as important as...

Evaluating functions applied to table columns

2

Original use case: https://github.com/cytoscape/cytoscape-tutorials/issues/54 A script app solution could be generalized in a few different ways, starting from this original use case: 1. **Qiime2 label split**: split the "Label" column...

Add interactions from a reference network in NDEx

1

Obviously, this could be a CyNDEx app feature as well, but I suspect it's easier to implement as a script app. Use case 1. User starts with a network (or...

http://yeast-interactome.biochem.mpg.de:3838/interactome/ https://www.nature.com/articles/s41586-023-06739-5 (Fig 4)

- enrichment table?

then share examples and critique

Add slide defining common network terms regarding subnetworks

1

- motifs - modules - subnetworks - complexes

New clustering app protocol

2

[Philipp]

circRNA-miRNA-mRNA (and Proteins) interaction protocol

3

[Franzi]