Alexander-Sol

Reading in an old XLSearchTask toml (found in Lei's data, [here](https://drive.google.com/drive/folders/1TrgwX0weDCIgiizsBHW0gdNjOTXYTRwe)) results in MetaMorpheus crashing when you try and open the XL Search Task Window

Spectra file connections aren't closed when the file is deleted from the Spectra tab

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**Describing the issue** A .raw file was searched and tasks were reset. The .raw file was then deleted from the "Spectra" tab. Attempting to move the file to a new...

WIP Adds the ability to read in MaxQuant evidence files and create spectral libraries based on their results. Adds additional information to the PeakQuantificationResults when using enhanced MBR

Spectral library generation is writing all PSMs where the PEP is less than 0.5. (Hard-coded) This feels high, possibly a typo. @YulingDai, is this the intended behavior? ``` filteredPsmList =...

Changed Target Architecture to x64

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mzLib only targets x64 processor architecture. Targeting "Any CPU" introduced warning messages when building. This PR switches MetaMorpheus to only target x64 architecture. Warnings are no longer generated on build....

**Describing the issue** When installing MetaMorpheus, unchecking the "Overwrite App Data" check box in the installer results in MetaMorpheus installing, then crashing on start **Reproducing the error** Uninstall MetaMorpheus. Re-install,...

Update dotnet.yml

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Attempting to fix issue with codecov

Mbr part1

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First part of my MBR overhaul. - Overhauled the scoring system in MBR Scorer - remove the unused PosteriorErrorProbability field from the FlashLFQ.Identification class - removed the unused RtPeakHypothesis, RtStdDev,...

Pwsm target decoy

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Changed PWSM hash code to only consider full sequence

Tims tof reader

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Contains the basic implementation of a reader for timsTOF data files