PySUS
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AlertaDengue
This error originates from a subprocess - pip install pySUS
Hello,
I'm having a problem installing pySUS that has the following erro:
PS C:\Users\otavi\GitHub\datasusI> pip install PySUS
Collecting PySUS
Using cached pysus-0.6.1-py3-none-any.whl (1.8 MB)
Collecting numpy==1.23.2
Using cached numpy-1.23.2-cp310-cp310-win_amd64.whl (14.6 MB)
Collecting dbfread==2.0.7
Using cached dbfread-2.0.7-py2.py3-none-any.whl (20 kB)
Collecting elasticsearch<9.0.0,>=8.3.3
Using cached elasticsearch-8.4.2-py3-none-any.whl (384 kB)
Collecting pyarrow<10.0.0,>=9.0.0
Using cached pyarrow-9.0.0-cp310-cp310-win_amd64.whl (19.5 MB)
Collecting cffi==1.15.1
Using cached cffi-1.15.1-cp310-cp310-win_amd64.whl (179 kB)
Collecting pytz==2022.2.1
Using cached pytz-2022.2.1-py2.py3-none-any.whl (500 kB)
Requirement already satisfied: pandas==1.4.3 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from PySUS) (1.4.3)
Collecting pyreaddbc==1.0.0
Using cached pyreaddbc-1.0.0.tar.gz (43 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting jupyterlab<4.0.0,>=3.4.5
Using cached jupyterlab-3.4.8-py3-none-any.whl (8.8 MB)
Collecting geocoder<2.0.0,>=1.38.1
Using cached geocoder-1.38.1-py2.py3-none-any.whl (98 kB)
Requirement already satisfied: python-dateutil==2.8.2 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from PySUS) (2.8.2)
Collecting pycparser==2.21
Using cached pycparser-2.21-py2.py3-none-any.whl (118 kB)
Requirement already satisfied: six==1.16.0 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from PySUS) (1.16.0)
Collecting wget<4.0,>=3.2
Using cached wget-3.2.zip (10 kB)
Preparing metadata (setup.py) ... done
Collecting tqdm==4.64.0
Using cached tqdm-4.64.0-py2.py3-none-any.whl (78 kB)
Collecting fastparquet<0.9.0,>=0.8.1
Using cached fastparquet-0.8.3-cp310-cp310-win_amd64.whl (603 kB)
Requirement already satisfied: colorama in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from tqdm==4.64.0->PySUS) (0.4.5)
Collecting elastic-transport<9,>=8
Using cached elastic_transport-8.4.0-py3-none-any.whl (59 kB)
Requirement already satisfied: packaging in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from fastparquet<0.9.0,>=0.8.1->PySUS) (21.3)
Collecting cramjam>=2.3.0
Using cached cramjam-2.5.0-cp310-none-win_amd64.whl (993 kB)
Collecting fsspec
Using cached fsspec-2022.8.2-py3-none-any.whl (140 kB)
Collecting future
Using cached future-0.18.2.tar.gz (829 kB)
Preparing metadata (setup.py) ... done
Collecting click
Using cached click-8.1.3-py3-none-any.whl (96 kB)
Collecting requests
Using cached requests-2.28.1-py3-none-any.whl (62 kB)
Collecting ratelim
Using cached ratelim-0.1.6-py2.py3-none-any.whl (4.0 kB)
Collecting tomli
Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Requirement already satisfied: tornado>=6.1.0 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from jupyterlab<4.0.0,>=3.4.5->PySUS) (6.2)
Requirement already satisfied: jupyter-core in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from jupyterlab<4.0.0,>=3.4.5->PySUS) (4.11.1)
Collecting notebook<7
Using cached notebook-6.4.12-py3-none-any.whl (9.9 MB)
Collecting jupyter-server~=1.16
Using cached jupyter_server-1.19.1-py3-none-any.whl (346 kB)
Requirement already satisfied: ipython in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from jupyterlab<4.0.0,>=3.4.5->PySUS) (8.5.0)
Collecting jinja2>=2.1
Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB)
Collecting jupyterlab-server~=2.10
Using cached jupyterlab_server-2.15.2-py3-none-any.whl (54 kB)
Collecting nbclassic
Using cached nbclassic-0.4.4-py3-none-any.whl (9.8 MB)
Collecting certifi
Using cached certifi-2022.9.24-py3-none-any.whl (161 kB)
Requirement already satisfied: urllib3<2,>=1.26.2 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from elastic-transport<9,>=8->elasticsearch<9.0.0,>=8.3.3->PySUS) (1.26.12)
Collecting MarkupSafe>=2.0
Using cached MarkupSafe-2.1.1-cp310-cp310-win_amd64.whl (17 kB)
Requirement already satisfied: jupyter-client>=6.1.12 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from jupyter-server~=1.16->jupyterlab<4.0.0,>=3.4.5->PySUS) (7.3.5)
Requirement already satisfied: pyzmq>=17 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from jupyter-server~=1.16->jupyterlab<4.0.0,>=3.4.5->PySUS) (24.0.1)
Collecting nbformat>=5.2.0
Using cached nbformat-5.6.1-py3-none-any.whl (77 kB)
Collecting terminado>=0.8.3
Using cached terminado-0.16.0-py3-none-any.whl (16 kB)
Collecting argon2-cffi
Using cached argon2_cffi-21.3.0-py3-none-any.whl (14 kB)
Collecting anyio<4,>=3.1.0
Using cached anyio-3.6.1-py3-none-any.whl (80 kB)
Collecting websocket-client
Using cached websocket_client-1.4.1-py3-none-any.whl (55 kB)
Collecting Send2Trash
Using cached Send2Trash-1.8.0-py3-none-any.whl (18 kB)
Collecting prometheus-client
Using cached prometheus_client-0.14.1-py3-none-any.whl (59 kB)
Requirement already satisfied: traitlets>=5.1 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from jupyter-server~=1.16->jupyterlab<4.0.0,>=3.4.5->PySUS) (5.4.0)
Collecting nbconvert>=6.4.4
Using cached nbconvert-7.1.0-py3-none-any.whl (272 kB)
Collecting pywinpty
Using cached pywinpty-2.0.8-cp310-none-win_amd64.whl (1.4 MB)
Requirement already satisfied: pywin32>=1.0 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from jupyter-core->jupyterlab<4.0.0,>=3.4.5->PySUS) (304)
Collecting json5
Using cached json5-0.9.10-py2.py3-none-any.whl (19 kB)
Collecting jsonschema>=3.0.1
Using cached jsonschema-4.16.0-py3-none-any.whl (83 kB)
Collecting babel
Using cached Babel-2.10.3-py3-none-any.whl (9.5 MB)
Collecting ipython-genutils
Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB)
Requirement already satisfied: ipykernel in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from notebook<7->jupyterlab<4.0.0,>=3.4.5->PySUS) (6.16.0)
Requirement already satisfied: nest-asyncio>=1.5 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from notebook<7->jupyterlab<4.0.0,>=3.4.5->PySUS) (1.5.5)
Requirement already satisfied: pygments>=2.4.0 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (2.13.0)
Requirement already satisfied: backcall in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (0.2.0)
Requirement already satisfied: jedi>=0.16 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (0.18.1)
Requirement already satisfied: matplotlib-inline in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (0.1.6)
Requirement already satisfied: decorator in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (5.1.1)
Requirement already satisfied: pickleshare in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (0.7.5)
Requirement already satisfied: prompt-toolkit<3.1.0,>3.0.1 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (3.0.31)
Requirement already satisfied: stack-data in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (0.5.1)
Collecting notebook-shim>=0.1.0
Using cached notebook_shim-0.1.0-py3-none-any.whl (13 kB)
Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from packaging->fastparquet<0.9.0,>=0.8.1->PySUS) (3.0.9)
Collecting charset-normalizer<3,>=2
Using cached charset_normalizer-2.1.1-py3-none-any.whl (39 kB)
Collecting idna<4,>=2.5
Using cached idna-3.4-py3-none-any.whl (61 kB)
Collecting sniffio>=1.1
Using cached sniffio-1.3.0-py3-none-any.whl (10 kB)
Requirement already satisfied: parso<0.9.0,>=0.8.0 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from jedi>=0.16->ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (0.8.3)
Collecting pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0
Using cached pyrsistent-0.18.1-cp310-cp310-win_amd64.whl (61 kB)
Collecting attrs>=17.4.0
Using cached attrs-22.1.0-py2.py3-none-any.whl (58 kB)
Requirement already satisfied: entrypoints in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from jupyter-client>=6.1.12->jupyter-server~=1.16->jupyterlab<4.0.0,>=3.4.5->PySUS) (0.4)
Collecting mistune<3,>=2.0.3
Using cached mistune-2.0.4-py2.py3-none-any.whl (24 kB)
Collecting pandocfilters>=1.4.1
Using cached pandocfilters-1.5.0-py2.py3-none-any.whl (8.7 kB)
Collecting bleach
Using cached bleach-5.0.1-py3-none-any.whl (160 kB)
Collecting jupyterlab-pygments
Using cached jupyterlab_pygments-0.2.2-py2.py3-none-any.whl (21 kB)
Collecting defusedxml
Using cached defusedxml-0.7.1-py2.py3-none-any.whl (25 kB)
Collecting tinycss2
Using cached tinycss2-1.1.1-py3-none-any.whl (21 kB)
Collecting nbclient>=0.5.0
Using cached nbclient-0.6.8-py3-none-any.whl (71 kB)
Collecting beautifulsoup4
Using cached beautifulsoup4-4.11.1-py3-none-any.whl (128 kB)
Collecting fastjsonschema
Using cached fastjsonschema-2.16.2-py3-none-any.whl (22 kB)
Requirement already satisfied: wcwidth in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from prompt-toolkit<3.1.0,>3.0.1->ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (0.2.5)
Collecting argon2-cffi-bindings
Using cached argon2_cffi_bindings-21.2.0-cp36-abi3-win_amd64.whl (30 kB)
Requirement already satisfied: debugpy>=1.0 in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from ipykernel->notebook<7->jupyterlab<4.0.0,>=3.4.5->PySUS) (1.6.3)
Requirement already satisfied: psutil in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from ipykernel->notebook<7->jupyterlab<4.0.0,>=3.4.5->PySUS) (5.9.2)
Requirement already satisfied: pure-eval in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from stack-data->ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (0.2.2)
Requirement already satisfied: asttokens in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from stack-data->ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (2.0.8)
Requirement already satisfied: executing in c:\users\otavi\appdata\local\programs\python\python310\lib\site-packages (from stack-data->ipython->jupyterlab<4.0.0,>=3.4.5->PySUS) (1.1.0)
Collecting soupsieve>1.2
Using cached soupsieve-2.3.2.post1-py3-none-any.whl (37 kB)
Collecting webencodings
Using cached webencodings-0.5.1-py2.py3-none-any.whl (11 kB)
Using legacy 'setup.py install' for wget, since package 'wheel' is not installed.
Using legacy 'setup.py install' for future, since package 'wheel' is not installed.
Building wheels for collected packages: pyreaddbc
Building wheel for pyreaddbc (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building wheel for pyreaddbc (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [62 lines of output]
C:\Users\otavi\AppData\Local\Temp\pip-install-nrhacx2h\pyreaddbc_c92f5d62c1db437f9316ae4b2e0f28a7\pyreaddbc/_readdbc.so
generating .\pyreaddbc\_readdbc.c
(already up-to-date)
the current directory is 'C:\\Users\\otavi\\AppData\\Local\\Temp\\pip-install-nrhacx2h\\pyreaddbc_c92f5d62c1db437f9316ae4b2e0f28a7'
running build_ext
building 'pyreaddbc._readdbc' extension
Traceback (most recent call last):
File "C:\Users\otavi\AppData\Local\Temp\pip-install-nrhacx2h\pyreaddbc_c92f5d62c1db437f9316ae4b2e0f28a7\pyreaddbc\_build_readdbc.py", line 37, in <module>
ffibuilder.compile(
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\cffi\api.py", line 725, in compile
return recompile(self, module_name, source, tmpdir=tmpdir,
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\cffi\recompiler.py", line 1564, in recompile
outputfilename = ffiplatform.compile('.', ext,
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\cffi\ffiplatform.py", line 22, in compile
outputfilename = _build(tmpdir, ext, compiler_verbose, debug)
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\cffi\ffiplatform.py", line 51, in _build
dist.run_command('build_ext')
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\dist.py", line 1217, in run_command
super().run_command(command)
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\_distutils\dist.py", line 987, in run_command
cmd_obj.run()
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\command\build_ext.py", line 84, in run
_build_ext.run(self)
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\_distutils\command\build_ext.py", line 346, in run
self.build_extensions()
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\_distutils\command\build_ext.py", line 466, in build_extensions
self._build_extensions_serial()
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\_distutils\command\build_ext.py", line 492, in _build_extensions_serial
self.build_extension(ext)
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\command\build_ext.py", line 246, in build_extension
_build_ext.build_extension(self, ext)
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\_distutils\command\build_ext.py", line 547, in build_extension
objects = self.compiler.compile(
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\_distutils\_msvccompiler.py", line 344, in compile
self.initialize()
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\_distutils\_msvccompiler.py", line 253, in initialize
vc_env = _get_vc_env(plat_spec)
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\msvc.py", line 214, in msvc14_get_vc_env
return _msvc14_get_vc_env(plat_spec)
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\setuptools\msvc.py", line 168, in _msvc14_get_vc_env
raise distutils.errors.DistutilsPlatformError(
distutils.errors.DistutilsPlatformError: Microsoft Visual C++ 14.0 or greater is required. Get it with "Microsoft C++ Build Tools": https://visualstudio.microsoft.com/visual-cpp-build-tools/
Traceback (most recent call last):
File "C:\Users\otavi\AppData\Local\Programs\Python\Python310\lib\site-packages\pip\_vendor\pep517\in_process\_in_process.py", line 363, in <module>
main()
File "C:\Users\otavi\AppData\Local\Programs\Python\Python310\lib\site-packages\pip\_vendor\pep517\in_process\_in_process.py", line 345, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "C:\Users\otavi\AppData\Local\Programs\Python\Python310\lib\site-packages\pip\_vendor\pep517\in_process\_in_process.py", line 261, in build_wheel
return _build_backend().build_wheel(wheel_directory, config_settings,
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\poetry\core\masonry\api.py", line 67, in build_wheel
return WheelBuilder.make_in(poetry, Path(wheel_directory))
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\poetry\core\masonry\builders\wheel.py", line 79, in make_in
wb.build(target_dir=directory)
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\poetry\core\masonry\builders\wheel.py", line 109, in build
self._build(zip_file)
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\poetry\core\masonry\builders\wheel.py", line 157, in _build
self._run_build_script(self._package.build_script)
File "C:\Users\otavi\AppData\Local\Temp\pip-build-env-8aw25hz7\overlay\Lib\site-packages\poetry\core\masonry\builders\wheel.py", line 217, in _run_build_script
subprocess.check_call([self.executable.as_posix(), build_script])
File "C:\Users\otavi\AppData\Local\Programs\Python\Python310\lib\subprocess.py", line 369, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['C:/Users/otavi/AppData/Local/Programs/Python/Python310/python.exe', 'pyreaddbc/_build_readdbc.py']' returned non-zero exit status 1.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for pyreaddbc
Failed to build pyreaddbc
ERROR: Could not build wheels for pyreaddbc, which is required to install pyproject.toml-based projects
PS C:\Users\otavi\GitHub\datasus>
@otavioaugust1 you need to Microsoft visual studio to compile one of the dependencies of PySUS. From your error message:
Microsoft Visual C++ 14.0 or greater is required. Get it with "Microsoft C++ Build Tools": https://visualstudio.microsoft.com/visual-cpp-build-tools/
Looking in indexes: https://pypi.org/simple, https://us-python.pkg.dev/colab-wheels/public/simple/ Collecting git+https://github.com/AlertaDengue/PySUS.git Cloning https://github.com/AlertaDengue/PySUS.git to /tmp/pip-req-build-3skfsjz7 Running command git clone -q https://github.com/AlertaDengue/PySUS.git /tmp/pip-req-build-3skfsjz7 Installing build dependencies ... done Getting requirements to build wheel ... done Preparing wheel metadata ... done Collecting dbfread==2.0.7 Using cached dbfread-2.0.7-py2.py3-none-any.whl (20 kB) Collecting pytz==2022.2.1 Downloading pytz-2022.2.1-py2.py3-none-any.whl (500 kB) |████████████████████████████████| 500 kB 5.3 MB/s Collecting jupyterlab<4.0.0,>=3.4.5 Using cached jupyterlab-3.4.8-py3-none-any.whl (8.8 MB) ERROR: Could not find a version that satisfies the requirement pyreaddbc==1.0.0 (from pysus) (from versions: none) ERROR: No matching distribution found for pyreaddbc==1.0.0
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for pyreaddbc Failed to build pyreaddbc ERROR: Could not build wheels for pyreaddbc, which is required to install pyproject.toml-based projects
For now PySUS is having building issues on windows.
We are looking into that. But for Now I suggest using WSL (installing Ubuntu from the windows store) or running PySUS on Google colab.
Em sáb., 8 de out. de 2022 02:14, Marcia Godoy @.***> escreveu:
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for pyreaddbc Failed to build pyreaddbc ERROR: Could not build wheels for pyreaddbc, which is required to install pyproject.toml-based projects
— Reply to this email directly, view it on GitHub https://github.com/AlertaDengue/PySUS/issues/97#issuecomment-1272230373, or unsubscribe https://github.com/notifications/unsubscribe-auth/AABCGW2AZDHJXNMIS3E5D7TWCD7KLANCNFSM6AAAAAAQ4ZQ6LQ . You are receiving this because you were assigned.Message ID: @.***>
I got these same errors when trying to installing on linux, using python 3.9, but after I upgrade to 3.11 version the installation worked. I also installed in another pc with python 3.8 version without problem.
Tive um problema parecido python esta na versão 3.11
Este é o erro que dá quando se tenta instalar no Windows. Ainda não é possível instalar o pyreaddbc no windows.