Laura Uelze

problem with NCBI genebank files

1

I encountered the following error when running genovi with a genebank file downloaded from NCBI (https://www.ncbi.nlm.nih.gov/nuccore/AL513382.1). I downloaded the files manually via `send to > complete record > file >...

performance question

1

Thanks for this nice tool. Just a quick question. Does HiFiAdapterFilt perform better if I run it on one large input file? Or would it be better to split my...

hic interactions statistics

3

I am running the arima pipeline, followed by yahs and then juicer pre (as described in this repository) to generate the required `out_JBAT.hic` file for manual curation in juicebox. This...

segmentation fault during mapping with ert/bwa-mem2 mem

2

I am running **ert/bwa-mem2 mem** and I have a weird segmentation error occurring, which is file specific to the fasta file and happens in about 1/4 of my assembled genomes....

kmer null

1

I have been running hifiasm successfully for some time. However, yesterday I got a very strange result for two birds (another bird species assembled just fine). Here is the example...

Error in strsplit(.peak_sizes[, "structure"], "") : non-character argumen

1

Hi and thank you for this great tool! I am trying to use smudgeplot for hifi data of a large amphibian genome. I am executing: ``` # Run FastK to...

I am analysing some older PacBio HiFi data with jasmine. The data is from 2023. When running jasmine v.2.4.0. I receive a warning in the log file: | 20251021 07:50:15.078...