Alberto Fabbri

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Results 37 comments of Alberto Fabbri

Documentation: Discrepancy in QC Metrics Between AtoMx Export and Seurat::LoadNanostring

It would be even better to import RNA, negative counts and system control to 3 different assays inside the same Seurat object.

There seems to be no parameter in plot_cells to remove the border of the point

Yep, the `cell_stroke`parameter does not remove the border.

Question about use of the population.size parameter in computeCommunProb for spatial datasets

Yes, I have the same exact doubt. I am running an analysis on CosMx data and I have `population.size = TRUE`.

Problem with plotting scale.data when DefaultAssay is set to RNA

I run into the same bug and I think this might be related: #### `VlnPlot()` warns about assay slot even when plotting metadata column ##### What I did I tried...

Problem with plotting scale.data when DefaultAssay is set to RNA

Hi @dizhengao, what you're saying makes sense. However, I think this warning should be removed when plotting `meta.data`, as it's not relevant in that context and could be misleading to...

Preview issue

Same problem, the HTML preview of my markdown files used to work but now it is broken and never finish loading. Samsung Galaxy S8 with Android 9

Two plots instead of one in Jupyter

I also get duplicated plots when using `netVisual_circle()` in RStudio Quarto with Chunk Output Inline selected.