Alex Eusman
Alex Eusman
Do we currently have the data from NWB CRCNS datasets? @jovo - This seems like it might be more straightforward to ingest, but I would need a CRCNS account. edit:...
I've tried to make sense of the allen institute data model and python package, but it is extremely confusing and badly documented (even after source diving): http://alleninstitute.github.io/AllenSDK/_static/examples/nb/brain_observatory.html#Download-Experiments-for-a-Container Part of the...
I contacted them yesterday, waiting on a response
This is sitting on bg1, but cannot be ingested yet due to the same issue with codeneuro.
So not sure if this is something for me, I've never ingested or added an atlas to the database, might be a @gkiar question?
@gkiar Is it just considered raw image data then? Also as a general comment only some have download links to pull the data so we may just have to contact...
I'm around starting today. Which ones do you want me to tackle @kunallillaney? I'll do at least the extract graph API this week.
@jovo I'm going to clean up/rewrite some of the Graphgen API stuff, but I'm not going to write an in detail explanation of what goes on under the hood yet...
@jovo @kunallillaney The generatejson.py script was making me sad me because it was messy and unclear (my fault). I re-factored/wrote a new class called autoingest.py which will be called by...
@jovo The pull request from me has been pulled in, I think everything from me is complete as per Monday meeting