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Unrecognized character found in trait file

Open shaodongyan opened this issue 2 years ago • 2 comments

Command: /opt/anaconda3/envs/scoary/bin/scoary -g gene_presence_absence_roary.csv -t Hostgroup_membership.csv -p 1 -c BH --no_pairwise Performing no pairwise comparisons. Ignoring all tree related options (user tree, population aware-correction, permutations). Reading gene presence absence file Ignoring relatedness among input sample and performing only population structure-naive analysis. Reading traits file CRITICAL: Traceback (most recent call last): File "/opt/anaconda3/envs/scoary/lib/python3.6/site-packages/scoary/methods.py", line 268, in main strains) File "/opt/anaconda3/envs/scoary/lib/python3.6/site-packages/scoary/methods.py", line 579, in Csv_to_dic "values (no commas): %s" % str(",".join(allowed_values))) SystemExit: Unrecognized character found in trait file. Allowed values (no commas): 0,1,NA,.,-, , Unrecognized character found in trait file. Allowed values (no commas): 0,1,NA,.,-, ,

Hostgroup_membership.csv

But My file is normal .could help me ? Thanks!

shaodongyan avatar Dec 11 '22 12:12 shaodongyan