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SmallMolLib unexpected behaviour
This returns a smallmol object with Hydrogens
SmallMolLib(reflig_sdf, removeHs=True)[0]
This returns a smallmol object without hydrogens:
SmallMolLib(reflig_sdf, removeHs=True, fixHs=False)[0]
fixHs is by default set to True, so hydrogens are "re-added" after removing then, which leads to unexpected behavior.