ANTsPyNet
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ANTsX
Conflicting dependencies (Apple Silicon M1 hardware Monterey 12.0.1)
Machine: MacBook Pro M1 2020 OS: macOS Monterey 12.0.1 Python version of venv: Python 3.8.12 Pip version: 21.3.1 I have installed Tensorflow using this guide.
When I execute pip install antspynet I get the following error:
Collecting antspynet
Using cached antspynet-0.1.3-py3-none-any.whl (151 kB)
Collecting tensorflow-probability
Using cached tensorflow_probability-0.15.0-py2.py3-none-any.whl (5.7 MB)
Collecting antspyx
Using cached antspyx-0.2.9.tar.gz (305.4 MB)
Preparing metadata (setup.py) ... done
Requirement already satisfied: statsmodels in /Users/htrivino/miniforge3/lib/python3.8/site-packages (from antspynet) (0.12.1)
Requirement already satisfied: requests in /Users/htrivino/miniforge3/lib/python3.8/site-packages (from antspynet) (2.26.0)
Requirement already satisfied: scikit-learn in /Users/htrivino/miniforge3/lib/python3.8/site-packages (from antspynet) (1.0.1)
Collecting antspynet
Using cached antspynet-0.1.2-py3-none-any.whl (143 kB)
Using cached antspynet-0.1.1-py3-none-any.whl (140 kB)
ERROR: Cannot install antspynet==0.1.1, antspynet==0.1.2 and antspynet==0.1.3 because these package versions have conflicting dependencies.
The conflict is caused by:
antspynet 0.1.3 depends on tensorflow
antspynet 0.1.2 depends on tensorflow
antspynet 0.1.1 depends on tensorflow
To fix this you could try to:
1. loosen the range of package versions you've specified
2. remove package versions to allow pip attempt to solve the dependency conflict
ERROR: ResolutionImpossible: for help visit https://pip.pypa.io/en/latest/user_guide/#fixing-conflicting-dependencies
This is the conda list of the environment.
# packages in environment at /Users/htrivino/miniforge3:
#
# Name Version Build Channel
absl-py 0.10.0 pyhd8ed1ab_1 conda-forge
aiohttp 3.7.4.post0 py38hea4295b_1 conda-forge
ants 0.0.7 pypi_0 pypi
appnope 0.1.2 py38h10201cd_2 conda-forge
argon2-cffi 21.1.0 py38hea4295b_2 conda-forge
asgiref 3.4.1 pypi_0 pypi
astor 0.8.1 pyh9f0ad1d_0 conda-forge
astunparse 1.6.3 pyhd8ed1ab_0 conda-forge
async-timeout 3.0.1 py_1000 conda-forge
async_generator 1.10 py_0 conda-forge
attrs 21.2.0 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
bleach 4.1.0 pyhd8ed1ab_0 conda-forge
blinker 1.4 py_1 conda-forge
bokeh 2.3.3 py38h10201cd_0 conda-forge
brotlipy 0.7.0 py38hea4295b_1003 conda-forge
c-ares 1.18.1 h3422bc3_0 conda-forge
ca-certificates 2021.10.8 h4653dfc_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cachetools 4.2.4 pyhd8ed1ab_0 conda-forge
certifi 2021.10.8 py38h10201cd_1 conda-forge
cffi 1.15.0 py38hc67bbb8_0 conda-forge
chardet 4.0.0 py38h10201cd_2 conda-forge
charset-normalizer 2.0.0 pyhd8ed1ab_0 conda-forge
clang 5.0 pypi_0 pypi
click 8.0.3 py38h10201cd_1 conda-forge
cloudpickle 2.0.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
conda 4.10.3 py38h10201cd_3 conda-forge
conda-package-handling 1.7.3 py38hea4295b_1 conda-forge
cryptography 35.0.0 py38h10d4710_2 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cytoolz 0.11.2 py38hea4295b_1 conda-forge
dask 2021.11.1 pyhd8ed1ab_0 conda-forge
dask-core 2021.11.1 pyhd8ed1ab_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
decorator 5.1.0 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
distributed 2021.11.1 py38h10201cd_0 conda-forge
django 3.2.9 pypi_0 pypi
entrypoints 0.3 pyhd8ed1ab_1003 conda-forge
flatbuffers 1.12 pypi_0 pypi
freetype 2.10.4 h17b34a0_1 conda-forge
fsspec 2021.11.0 pyhd8ed1ab_0 conda-forge
gast 0.4.0 pyh9f0ad1d_0 conda-forge
gevent 21.8.0 pypi_0 pypi
google-auth 1.35.0 pyh6c4a22f_0 conda-forge
google-auth-oauthlib 0.4.6 pyhd8ed1ab_0 conda-forge
google-pasta 0.2.0 pyh8c360ce_0 conda-forge
greenlet 1.1.2 pypi_0 pypi
grpcio 1.41.1 py38h69ee544_1 conda-forge
h5py 3.1.0 nompi_py38h032b01a_100 conda-forge
hdf5 1.10.6 nompi_h0fc092c_1114 conda-forge
heapdict 1.0.1 py_0 conda-forge
idna 3.1 pyhd3deb0d_0 conda-forge
importlib-metadata 4.8.2 py38h10201cd_0 conda-forge
importlib_resources 5.4.0 pyhd8ed1ab_0 conda-forge
ipykernel 5.5.5 py38h2cb4d76_0 conda-forge
ipython 7.29.0 py38h2cb4d76_1 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.6.5 pyhd8ed1ab_0 conda-forge
jbig 2.1 h3422bc3_2003 conda-forge
jedi 0.18.0 py38h10201cd_3 conda-forge
jinja2 3.0.3 pyhd8ed1ab_0 conda-forge
joblib 1.1.0 pyhd8ed1ab_0 conda-forge
jpeg 9d h27ca646_0 conda-forge
jsonschema 4.2.1 pyhd8ed1ab_0 conda-forge
jupyter 1.0.0 py38h10201cd_6 conda-forge
jupyter_client 7.0.6 pyhd8ed1ab_0 conda-forge
jupyter_console 6.4.0 pyhd8ed1ab_0 conda-forge
jupyter_core 4.9.1 py38h10201cd_0 conda-forge
jupyterlab_pygments 0.1.2 pyh9f0ad1d_0 conda-forge
jupyterlab_widgets 1.0.2 pyhd8ed1ab_0 conda-forge
keras 2.6.0 pyhd8ed1ab_0 conda-forge
keras-preprocessing 1.1.2 pyhd8ed1ab_0 conda-forge
kiwisolver 1.3.2 py38h1670459_1 conda-forge
krb5 1.19.2 hd92b7a7_3 conda-forge
lcms2 2.12 had6a04f_0 conda-forge
lerc 3.0 hbdafb3b_0 conda-forge
libblas 3.9.0 12_osxarm64_openblas conda-forge
libcblas 3.9.0 12_osxarm64_openblas conda-forge
libclang 11.1.0 default_h0fdd720_1 conda-forge
libcurl 7.80.0 h8fe1914_0 conda-forge
libcxx 12.0.1 h168391b_0 conda-forge
libdeflate 1.8 h3422bc3_0 conda-forge
libedit 3.1.20191231 hc8eb9b7_2 conda-forge
libev 4.33 h642e427_1 conda-forge
libffi 3.4.2 h3422bc3_5 conda-forge
libgfortran 5.0.0.dev0 11_0_1_hf114ba7_23 conda-forge
libgfortran5 11.0.1.dev0 hf114ba7_23 conda-forge
liblapack 3.9.0 12_osxarm64_openblas conda-forge
libllvm11 11.1.0 h93073aa_2 conda-forge
libnghttp2 1.43.0 he4cd7f6_1 conda-forge
libopenblas 0.3.18 openmp_h5dd58f0_0 conda-forge
libpng 1.6.37 hf7e6567_2 conda-forge
libprotobuf 3.19.1 hccf11d3_0 conda-forge
libsodium 1.0.18 h27ca646_1 conda-forge
libssh2 1.10.0 hb80f160_2 conda-forge
libtiff 4.3.0 h74060c4_2 conda-forge
libwebp-base 1.2.1 h3422bc3_0 conda-forge
libzlib 1.2.11 hee7b306_1013 conda-forge
llvm-openmp 12.0.1 hf3c4609_1 conda-forge
locket 0.2.0 py_2 conda-forge
lz4-c 1.9.3 hbdafb3b_1 conda-forge
markdown 3.3.4 pyhd8ed1ab_0 conda-forge
markupsafe 2.0.1 py38hea4295b_1 conda-forge
matplotlib-base 3.4.3 py38hb140015_1 conda-forge
matplotlib-inline 0.1.3 pyhd8ed1ab_0 conda-forge
mistune 0.8.4 py38hea4295b_1005 conda-forge
msgpack-python 1.0.2 py38h1670459_2 conda-forge
multidict 5.2.0 py38hea4295b_1 conda-forge
nb_conda_kernels 2.3.1 py38h10201cd_0 conda-forge
nbclient 0.5.5 pyhd8ed1ab_0 conda-forge
nbconvert 6.2.0 py38h10201cd_0 conda-forge
nbformat 5.1.3 pyhd8ed1ab_0 conda-forge
ncurses 6.2 h9aa5885_4 conda-forge
nest-asyncio 1.5.1 pyhd8ed1ab_0 conda-forge
notebook 6.4.5 pyha770c72_0 conda-forge
numpy 1.19.5 py38hbf7bb01_2 conda-forge
oauthlib 3.1.1 pyhd8ed1ab_0 conda-forge
olefile 0.46 pyh9f0ad1d_1 conda-forge
openjpeg 2.4.0 h062765e_1 conda-forge
openssl 1.1.1l h3422bc3_0 conda-forge
opt_einsum 3.3.0 pyhd8ed1ab_1 conda-forge
packaging 21.0 pyhd8ed1ab_0 conda-forge
pandas 1.3.4 py38h3777fb4_1 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parso 0.8.2 pyhd8ed1ab_0 conda-forge
partd 1.2.0 pyhd8ed1ab_0 conda-forge
patsy 0.5.2 pyhd8ed1ab_0 conda-forge
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 8.4.0 py38h02acf36_0 conda-forge
pip 21.3.1 pypi_0 pypi
plotly 5.3.1 pyhd8ed1ab_0 conda-forge
prometheus_client 0.12.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.22 pyha770c72_0 conda-forge
prompt_toolkit 3.0.22 hd8ed1ab_0 conda-forge
protobuf 3.19.1 py38h6f2b01f_1 conda-forge
psutil 5.8.0 py38hea4295b_2 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pyasn1 0.4.8 py_0 conda-forge
pyasn1-modules 0.2.7 py_0 conda-forge
pycosat 0.6.3 py38hea4295b_1009 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pygments 2.10.0 pyhd8ed1ab_0 conda-forge
pyjwt 2.3.0 pyhd8ed1ab_0 conda-forge
pyopenssl 21.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.5 pyhd8ed1ab_0 conda-forge
pyrsistent 0.18.0 py38hea4295b_0 conda-forge
pysocks 1.7.1 py38h10201cd_4 conda-forge
python 3.8.12 hab31e5c_2_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python_abi 3.8 2_cp38 conda-forge
pytz 2021.3 pyhd8ed1ab_0 conda-forge
pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 py38hea4295b_3 conda-forge
pyzmq 22.3.0 py38h51b17a6_1 conda-forge
readline 8.1 hedafd6a_0 conda-forge
requests 2.26.0 pyhd8ed1ab_0 conda-forge
requests-oauthlib 1.3.0 pyh9f0ad1d_0 conda-forge
rsa 4.7.2 pyh44b312d_0 conda-forge
ruamel_yaml 0.15.80 py38hea4295b_1006 conda-forge
scikit-learn 1.0.1 py38hfeda2c9_1 conda-forge
scipy 1.7.2 py38hd0c9ec0_0 conda-forge
seaborn 0.11.2 hd8ed1ab_0 conda-forge
seaborn-base 0.11.2 pyhd8ed1ab_0 conda-forge
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
setuptools 58.5.3 py38h10201cd_0 conda-forge
six 1.15.0 pyh9f0ad1d_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge
sqlite 3.36.0 h72a2b83_2 conda-forge
sqlparse 0.4.2 pypi_0 pypi
statsmodels 0.12.1 py38h8369297_2 conda-forge
tblib 1.7.0 pyhd8ed1ab_0 conda-forge
tenacity 8.0.1 pyhd8ed1ab_0 conda-forge
tensorboard 2.6.0 pyhd8ed1ab_1 conda-forge
tensorboard-data-server 0.6.0 py38h10d4710_1 conda-forge
tensorboard-plugin-wit 1.8.0 pyh44b312d_0 conda-forge
tensorflow-deps 2.6.0 0 apple
tensorflow-estimator 2.6.0 py38hddd8853_0 conda-forge
tensorflow-macos 2.6.0 pypi_0 pypi
tensorflow-metal 0.2.0 pypi_0 pypi
termcolor 1.1.0 py_2 conda-forge
terminado 0.12.1 py38h10201cd_1 conda-forge
testpath 0.5.0 pyhd8ed1ab_0 conda-forge
threadpoolctl 3.0.0 pyh8a188c0_0 conda-forge
tk 8.6.11 he1e0b03_1 conda-forge
toolz 0.11.2 pyhd8ed1ab_0 conda-forge
tornado 6.1 py38hea4295b_2 conda-forge
tqdm 4.62.3 pyhd8ed1ab_0 conda-forge
traitlets 5.1.1 pyhd8ed1ab_0 conda-forge
tsfresh 0.17.0 py_0 conda-forge
typeguard 2.13.0 pyhd8ed1ab_0 conda-forge
typing-extensions 3.7.4.3 0 conda-forge
typing_extensions 3.7.4.3 py_0 conda-forge
tzdata 2021e he74cb21_0 conda-forge
urllib3 1.26.7 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
werkzeug 2.0.1 pyhd8ed1ab_0 conda-forge
wheel 0.35.1 pyh9f0ad1d_0 conda-forge
widgetsnbextension 3.5.2 py38h10201cd_0 conda-forge
wrapt 1.12.1 py38hea4295b_3 conda-forge
xz 5.2.5 h642e427_1 conda-forge
yaml 0.2.5 h642e427_0 conda-forge
yarl 1.7.2 py38hea4295b_1 conda-forge
zeromq 4.3.4 hbdafb3b_1 conda-forge
zict 2.0.0 py_0 conda-forge
zipp 3.6.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.11 hee7b306_1013 conda-forge
zope-event 4.5.0 pypi_0 pypi
zope-interface 5.4.0 pypi_0 pypi
zstd 1.5.0 h861e0a7_0 conda-forge
I don't explicitly install via pip (instead python setup.py install). I just tried it with a newly installed Monterey OSX (not the M1 hardware, though) and didn't have issues. I'm guessing not many, if any, users have the M1 hardware currently.
Hey, I see you installed tensorflow on max os 12. I am trying to do the same, using the guide you mention, but i always get
ERROR: tensorflow_macos-0.1a3-cp38-cp38-macosx_11_0_arm64.whl is not a supported wheel on this platform.
as the output. What should I do? I checked all the prerequisites and the sanity checks.
My machine is a macbook pro 2020 M1
Hey, I see you installed tensorflow on max os 12. I am trying to do the same, using the guide you mention, but i always get
ERROR: tensorflow_macos-0.1a3-cp38-cp38-macosx_11_0_arm64.whl is not a supported wheel on this platform.as the output. What should I do? I checked all the prerequisites and the sanity checks.My machine is a macbook pro 2020 M1
I had the same issue, pip install tensorflow-macos worked upgrading pip pip install --upgrade pip. More info
For others, upgrading pip and following this guide helped me resolve my issue on my 2021 MacBook Pro.
As a follow-up, finally got the M1 and was able to get both ANTsPyNet and ANTsRNet up and running without too much difficulty. Thanks for pointing to the link above.