find equivalent for command line tool in antspy
hi i have below code :
time_start=date +%s`
inputPath=${PWD}
dim=3 its=[50x50x5,1.e-7,5] its2=[5x5x5,1.e-7,5] smth=4x2x1 down=4x2x1 tx=" syn[ 0.25 , 2, 2 ] "
f=${inputPath}/MR_N1.nii;
for (( i = 1; i < 8 ; i++ ));
do
nm=N$i
m=${inputPath}/${nm}.nii;
${ANTSPATH}/antsRegistration -d $dim
-r [$f, $m,1]
-m MI[ $f, $m , 1, 32 ]
-t affine[ 0.5 ]
-c $its
-s $smth
-f $down
-m MI[ $f, $m , 1, 32 ]
-t $tx
-c $its2
-s $smth
-f $down
-u 1
-o [${nm},${nm}_diffToMRN1.nii,${nm}_invToMRN1.nii]
mReg=${inputPath}/${nm}_diffToMRN1.nii;
${ANTSPATH}/MeasureImageSimilarity $dim -m MI[ $f, $mReg , 1, 32 ]
done
time_end=date +%s
time_elapsed=$((time_end - time_start))
`
and i want to run this code by antspy library in python and i dont know what are -r , -m, MI, -t, -c, -u, -o and what are equivalent for them in ants.registration in antspy could you help me or give me link of tutorial till i know what is this command line code do and convert it to antspy