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A collection of physics databases and implementation code for use with the Pele suite of of codes

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Overall objective: make the documentation organization match the code organization - [x] Quickstart/Installation - [ ] Introduction: overview of code functionality and design - [ ] Major source components -...

Reworked the `CEPTR` modules generating `mechanism.cpp` to work with heterogeneous reaction mechanisms. - Methods changed/added in: 1. `ck.py`: `ckncf`, `cksyme_str`, `cksyms_str`, `ckkfkr` 2. `production.py`: `progress_rate_fr` 3. `utilities.py`: Added `get_function_prefix`, `get_phase`,...

The `NonIdealChungCorrections` routine for `Simple` transport provides modified transport coefficients for real gasses (i.e. SRK EOS in Pele). The corrections are based on empirical relationships from Chung 1984 and 1988...

The deltaT solve in LM/LMeX can fail when the species thermodynamic is not C1, with residuals bouncing +/-. This can be the case around the low temperature to high temperature...

Hello! When I use a 2D axisymmetric model to calculate a spray case, as shown in the attached figure, I encounter this error message at a certain step of the...

Includes new capability to define black box function (either a table or a neural network) and use this function in an EOS. Still some cleaning up that needs to get...

- Pass eosparm through the ReactorRK64 call stack so it can be used as needed - Also fixes a bug where the limit to avoid overstepping the integration time for...

Chemistry mask implementation. Updated Arkode, Cvode, RK64, and BDF chem integrators to mask chemical reactions inside a user-specified box region. Verified code change on PMF case for Clang serial, MPI,...

From @mrieth1: I think that might just be incompatible with rocm >= 5.7, when I load: ``` module load cray-python module load PrgEnv-cray module load rocm/6.0.0 module load craype-accel-amd-gfx90a module...

I am converting the [HyChem Jet-A (posf10325) mechanism](https://web.stanford.edu/group/haiwanglab/HyChem/pages/download.html) for use in PelePhysics. I get an error when generating the QSS version, because it appears that some comments in the mechanism...