update source_flag to work with spherical and allow geometric source terms for 1d spherical

[zhichen3]

PR summary

update source_flag to work with spherical and allow geometric source terms for 1d spherical

PR motivation

PR checklist

• [ ] test suite needs to be run on this PR
• [ ] this PR will change answers in the test suite to more than roundoff level
• [ ] all newly-added functions have docstrings as per the coding conventions
• [ ] the CHANGES file has been updated, if appropriate
• [ ] if appropriate, this change is described in the docs

[zingale]

good catch!