AMReX-Astro
massive_star:0 amrex::Error::0::unsuccessful burn !!! SIGABRT See Backtrace.0.7 file for details
Hi,
We are trying to create different ensemble data from CASTRO->science->massive_star but I have this issue:
0 amrex::Error::0::unsuccessful burn !!! SIGABRT See Backtrace.0.7 file for details
I used 3D input files and OMP. And set n_cell=128, max_level=0, here is the output of backtrace file:
Host Name: node88
=== If no file names and line numbers are shown below, one can run
addr2line -Cpfie my_exefile my_line_address
to convert my_line_address (e.g., 0x4a6b) into file name and line number.
Or one can use amrex/Tools/Backtrace/parse_bt.py.
=== Please note that the line number reported by addr2line may not be accurate. One can use readelf -wl my_exefile | grep my_line_address' to find out the offset for that line.
0: ./Castro3d.gnu.OMP.SMPLSDC.ex() [0x743e10] amrex::BLBackTrace::print_backtrace_info(_IO_FILE*) /scratch/p310347/Simulation/Castro/Exec/science/massive_star/../../../external/amrex/Src/Base/AMReX_BLBackTrace.cpp:213:36
1: ./Castro3d.gnu.OMP.SMPLSDC.ex() [0x7470df] amrex::BLBackTrace::handler(int) /scratch/p310347/Simulation/Castro/Exec/science/massive_star/../../../external/amrex/Src/Base/AMReX_BLBackTrace.cpp:101:15
2: ./Castro3d.gnu.OMP.SMPLSDC.ex() [0x5e2b93] amrex::Error_host(char const*, char const*) /scratch/p310347/Simulation/Castro/Exec/science/massive_star/../../../external/amrex/Src/Base/AMReX.cpp:252:1
3: ./Castro3d.gnu.OMP.SMPLSDC.ex() [0x5850b7] Castro::react_state(double, double) [clone ._omp_fn.2] /scratch/p310347/Simulation/Castro/Exec/science/massive_star/../../../external/amrex/Src/Base/AMReX.H:128:9
4: /lib64/libgomp.so.1(+0x1b4be) [0x7fada44cd4be] ?? ??:0
5: /lib64/libpthread.so.0(+0x81ca) [0x7fada40821ca] ?? ??:0
6: /lib64/libc.so.6(clone+0x43) [0x7fada3cdd8d3]
thank you for your help
13 0.0001102771050612239 0.01277919748129779 0.02303495601908906 0.9059733395986038 0.05327260305468862 3.179700893490464e-09 0.0004538349228009201 aux start = 0.4834058922574104 51.83245169866743 8.712844639763484 dens current = 9892875.032519242 temp current = 4354828330.154302 xn current = 1.056057959788908e-10 8.314458094436621e-11 0.002208124324942355 1.33153258508414e-09 4.485929442571638e-15 6.930955495888877e-09 4.755624160819972e-11 1.238417105395279e-07 0.0005132340234039652 0.000692353422431463 0.0003910576513235619 0.0007555356733703677 1.479938274710818e-05 0.004527143533592282 0.02237903000333571 0.9040792862892483 0.06405554831334512 3.76194939037215e-08 0.0003837174222553694 aux current = 0.4834496309626842 51.5023631199794 8.719334187282911 A(rho) = -17208560.87545566 A(rho e) = -4.654470524605643e+24 A(rho X_k) = -0.001720856087545566 -0.001720856087545566 -54140.70730483975 -0.02417518907542104 -0.001720856087545566 -0.1028818344883599 -0.001720856087545566 -0.7194244130797384 -3755.991748481398 -6374.564579729567 -5067.001216503536 -9833.100737362171 -1925.733733796751 -221676.9178331913 -397866.1358942723 -15581110.67487727 -918494.3655002537 -0.05796088945691565 -8314.770704201064 A(rho aux_k) = -8319145.656814077 -888581176.0611647 -149925319.1935086 DVODE: error test failed repeatedly or with abs(H) = HMIN [ERROR] integration failed in net istate = -2 zone = (64, 63, 63) time = 0.05594039349338919 dt = 0.06883757061222584 dens start = 9893194.726033544 temp start = 1206645374.012526 rhoe start = 1.750529441785001e+24 xn start = 1e-10 1e-10 0.002966769818705347 1.330809733624189e-09 1e-10 5.67960937268713e-09 1e-10 3.999716645164072e-08 0.0002096115117958537 0.0003573169333816836 0.0002854520796486939 0.0005565874769661251 0.0001102771143942957 0.01277920023645698 0.02303496113792425 0.9059735034527479 0.05327243550756862 3.179706000858559e-09 0.0004538341431187908 aux start = 0.4834058849173831 51.83245405357761 8.712844680044121 dens current = 8930467.706689069 temp current = 4354828330.154302 xn current = -3.998428395018453e-08 -8.894879206285854e-12 0.002143248988563987 1.397318734298793e-05 -0.009999999997634729 7.674035697923975e-05 -3.85556606268319e-05 3.069897467435998e-06 0.01084118297148409 0.01112675738136226 0.004845390420400267 0.005911635132380738 4.314935739239019e-05 0.0003347950119313738 0.004382698144001394 0.9054855874712371 0.06440464026858894 3.331757455313088e-09 0.0004257632743125856 aux current = 0.4834446281296963 51.86918917481488 8.727127815285062 A(rho) = -17209872.13753236 A(rho e) = -4.654426382384338e+24 A(rho X_k) = -0.001720987213753239 -0.001720987213753239 -54145.28228267155 -0.02417719145888769 -0.001720987213753239 -0.1028902717922931 -0.001720987213753239 -0.719482358344534 -3756.289202521997 -6375.062673083186 -5067.391855286757 -9833.845553492245 -1925.885284510998 -221694.1898061478 -397896.8509122249 -15582301.96120314 -918559.0126433019 -0.0579659759249572 -8315.454716243215 A(rho aux_k) = -8319779.380546335 -888648442.7760029 -149936743.0295006 rho = 8930467.70669 T = 4354828330.15 xn = -3.99842839502e-08 -8.89487920629e-12 0.00214324898856 1.3973187343e-05 -0.00999999999763 7.67403569792e-05 -3.85556606268e-05 3.06989746744e-06 0.0108411829715 0.0111267573814 0.0048453904204 0.00591163513238 4.31493573924e-05 0.000334795011931 0.004382698144 0.905485587471 0.0644046402686 3.33175745531e-09 0.000425763274313 (i, j, k) = 64 63 63 aux = 0.48344462813 51.8691891748 8.72712781529 y[SRHO] = 8930467.70669 y[SEINT] = 1.5744262929e+24 y[SFS:] = 0 0 18949.9839044 123.546856504 0 678.515906147 0 27.1431401141 95854.5852164 98379.5510508 42841.5321631 52268.9576456 381.514062264 2960.1600753 38750.5416915 8006040.08204 569447.088495 0.0294584299297 3764.47498091 y[SFX:] = 4318856.07459 451106884.751 77826443.687 ydot_a[SRHO] = -17209872.1375 ydot_a[SEINT] = -4.65442638238e+24 ydot_a[SFS:] = -0.00172098721375 -0.00172098721375 -54145.2822827 -0.0241771914589 -0.00172098721375 -0.102890271792 -0.00172098721375 -0.719482358345 -3756.28920252 -6375.06267308 -5067.39185529 -9833.84555349 -1925.88528451 -221694.189806 -397896.850912 -15582301.9612 -918559.012643 -0.057965975925 -8315.45471624 ydot_a[SFX:] = -8319779.38055 -888648442.776 -149936743.03
0 amrex::Error::0::unsuccessful burn !!! SIGABRT See Backtrace.0.7 file for details
okay, so it is failing in the burner. Honestly, I don't think this problem should work well at such a coarse resolution -- you are doing zones that are 1280 km in size, so the initial model is really smeared out. We suggest running at 20 km resolution at the core, which is what the inputs is setup for.
thanks for the response. How should I set inner core resolution to 20km, just set n_cell to 2 according to the scaling factor that project n_cells=128 to 1280 km?
Thanks. I then switched to CASTRO/wdmerger. It suits my case well.
But I observed that there is no velocity filed in wdmerger's output, is there any method I can add it to the final plot file? And BTW, which parameters I can adjust so that the simulation will be different for creating ensemble data? Thank you