pyradiomics
pyradiomics copied to clipboard
Feature Extraction - Old version appears to have more options
I am using the following configuration file in radiomics v3.0.1, but found out that it's probably because it's in old format.
I want, like described in the file, the percentiles 10, 25, and 50. Checking the documentation and the new format, I found that I must set in the file internal functions and for percentiles there's only: get10PercentileFeatureValue()
and get90PercentileFeatureValue()
Is there any way to use percentiles 10, 25, and 50?
---
enabledFeatures:
- firstorder
- glcm
- shape
- texture
- intensity
- morphology
imageType:
- ORIGINAL
settings:
binWidth: 25
resampledPixelSpacing: [1,1,1]
interpolation: Linear
enableCExtensions: True
smooth:
- LaplacianOfGaussian
smooth_params:
- sigma: [1.0, 2.0, 3.0, 4.0, 5.0]
intensity_features:
- mean
- standard_deviation
- percentiles: [10, 25, 50]
- percentiles_SD: [10, 25, 50]
- kurtosis
- skewness
glcm_features:
- contrast
- entropy
- homogeneity
- energy
- correlation
- uniformity
- dissimilarity
glcm_directions: [0, 45, 90, 135]
glcm_distances: [1, 2, 3]
For easier time, I want to reproduce the configs presented in the following images:
Text indicating the features used.
Image of the features previously mentioned.