model-angelo
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3dem
Automatic atomic model building program for cryo-EM maps
Hello - I was testing my model-angelo v.1.0.1 installation using this RNA only cryo-EM map: https://www.rcsb.org/structure/6ues https://www.emdataresource.org/EMD-20755 But, with this as input, the job won't start. Instead, it displays the...
Hi Kiarash, Can you provide a suggestion on which volume to use for ModelAngelo? My results vary when using maps from a refinement job (I’m using CS), a post phenix...
Hello, I encountered an issue when trying to test model-angelo with model_angelo build -h on my macbook. I got the following error: error: command '/var/folders/nz/j6p8yfhx1mv_0grj5xl4650h0000gp/T/abs_810lo85vyi/croot/python-split_1678271120546/_build_env/bin/llvm-ar' failed: No such file or...
Trying to install Model-Angelo into a fairly barebones Ubuntu 22.04 environment (in a cloud Docker instance, if that makes a difference) leaves me in conda package resolution hell (see stderr...
I'm trying to determine a structure of an unknown contaminant protein by cryoEM single particle analysis. I wanted to generate a main-chain model of my density map from cryoSPARC. However,...
See here: https://github.com/althonos/pyhmmer/issues/40#issuecomment-1554741795
Hi Model-angelo experts, When I used the model_angelo to predict the protein sequence with a MRC map only, some error had appeared as following that "File "/data/wangning/anaconda3/envs/model_angelo/lib/python3.9/urllib/request.py", line 494, in...
Hello, when I run the ModelAngelo command as in the guide, providing the fasta sequence, the output is only half of the sequence for the non-raw .cif or a wrong...
I have done the model building by model-angelo with a fasta sequence, but when I open the output data in pymol, the protein sequence is wrong and it is the...
