DynaMight
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3dem
Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset
Hi, when I run dynamight using an initial model (mrc file) and an atomic model for regularization (pdb), I receive the error "local variable gpu_box referenced before assignment" . Any...
Dear DynaMight authors, First of all, I would like to thank you for your outstanding work and for making DynaMight open source. I am trying to use DynaMight after installing...
This pull request addresses an issue in the `optimize_inverse_deformations.py` file by adding a missing import (**is_relion_abort**) and implementing exception handling for the script.
Hi, I've been testing DynaMight on a set of particles from empiar (10028). I downsampled the particles from box size 360px to 128px with` relion_image_handler`, and prepared a refined model...
Hi, As I'm trying to perform "Estimating inverse deformations", I got the following error immediately at the stage of "Assigning a diameter" iteration. NameError: name 'is_relion_abort' is not defined --------------------------------------------------------------------------...
Various links in the README (the shields, as well as the `pip install`) lead to https://pypi.org/project/dynamight/ , which appears to be a different (much older) project under the same name.
package not yet available on PyPI - change instructions to match editable install for now @schwabjohannes dynamight is taken on pypi... something like `dynamight-3dem` could work, thoughts?
I enjoyed reading your preprint ["DynaMight: estimating molecular motions with improved reconstruction from cryo-EM images"](https://www.biorxiv.org/content/10.1101/2023.10.18.562877v1). Although I could have sent this by private email, now that the preprint is public,...
