How to get the coordinates of TAD

[CaiCheng1996]

What should I do to get a file containing the coordinates of TAD after I running "find_tad", I can only using "savefig" to get the picture but failed to get the output file with "save_chromosome". Can anyone be so kind to help me?

[david-castillo]

Hi,

The Chromosome object has a set of experiments associated. Each Experiment object has a tads dictionary and a function called write_tad_borders.

Have a look also at the tutorial http://3dgenomes.github.io/TADbit/tutorial/tutorial_8-Compartments_and_TADs_detection.html#tads

Regards

David