Zoe Clarke

Of course! My trna file is very small, as it's the output of EukHighConfidenceFilter, the internal script of tRNAScanSE that filters for high confidence RNAs. I'm thinking now that perhaps...

My target genome is 2.5 G and is made up of 3123 contigs. What I have done in the meantime is transported my work over to a computer cluster. Flo...

Sorry, I realize I think I found an identical error in this other issue post: [https://github.com/wurmlab/flo/issues/15](https://github.com/wurmlab/flo/issues/15). I posted there, as I took the advice mentioned. Happy to then close this...

Hi @yeban - I heeded your advice to avoid spamming another issue thread, and reopened my original one. You mentioned that the error `the multi-feature with ID "cds-XP_015332030.1" on line...

Hi @CowanCS1 - thank you for your input! I tried grepping MT- on the GFF file, however no matches came up. It's like the genes disappeared entirely! I ended up...

Hi @felixm3 - I tried to recreate your error but couldn't, so I'm not sure exactly what's happening here. One thing that is consistent is that you're getting formatting errors,...

Hi there - I also had this issue. I was trying to run OrthoFiller using nohup, and it was not working for the life of me. Turns out, all I...

Thanks, @xonq ! I fixed my gtf with gffread (which seems to do a pretty good job at standardizing gtf files by making them as simple as possible). I had...