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Cluster labels missing, and where to find annotations for 68K PBMC?

Open lynnyi opened this issue 6 years ago • 7 comments

Hi,

I'm looking for annotations for the 68K PBMC dataset that corresponds to Fig 3 in Zheng et al.

I downloaded the kmeans clustering labels for the 68K PBMCs from this site (https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/fresh_68k_pbmc_donor_a) , but the 10 cluster .csv file only had cluster labels for 40,000 cells, not the fully dataset.

Furthermore, I notice that the numbering scheme for these clusters does not match the numbering scheme for Figure 3 in Zheng et al., making it difficult to assign cell types to the cluster numbers. Could you also provide the annotations for all 68K cells?

Thank you, Lynn

lynnyi avatar Aug 08 '18 23:08 lynnyi