single-cell-3prime-paper
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Cluster labels missing, and where to find annotations for 68K PBMC?
Hi,
I'm looking for annotations for the 68K PBMC dataset that corresponds to Fig 3 in Zheng et al.
I downloaded the kmeans clustering labels for the 68K PBMCs from this site (https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/fresh_68k_pbmc_donor_a) , but the 10 cluster .csv file only had cluster labels for 40,000 cells, not the fully dataset.
Furthermore, I notice that the numbering scheme for these clusters does not match the numbering scheme for Figure 3 in Zheng et al., making it difficult to assign cell types to the cluster numbers. Could you also provide the annotations for all 68K cells?
Thank you, Lynn