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Error when converting vcf to gds

Open AmanahLW opened this issue 3 years ago • 2 comments
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I'm starting to get an error when running seqVCF2GDS function to covert BCFTools, Strelka2 and GATK uncompressed VCF to GDS. The code i'm using: gatkgds<-seqVCF2GDS(gatk.fn, "samples50_gatk_WT.gds", parallel = 17 , storage.option="LZMA_RA")

Error in seqOpen(fn, allow.duplicate = TRUE) : The number of compression blocks should be defined.

AmanahLW avatar Aug 23 '22 09:08 AmanahLW

Sorry, this issue should have been posted on seqarray repo.

AmanahLW avatar Aug 23 '22 10:08 AmanahLW

Please use a single core: parallel = 1

zhengxwen avatar Aug 24 '22 18:08 zhengxwen