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Published 20 hours ago • verified publisher icon zhengxwen

SNPRelate cannot find variant.id from SeqArray object

Open yanglipmed opened this issue 4 years ago • 2 comments

In SeqArray object, this is variant.id. When SNPRelate::snpgdsSummary( ) opens SeqArray object, it gives error: Error in index.gdsn(gds, "snp.id") : No such GDS node "snp.id"!.

How to link snp.id to variant.id in SNPRelate?

yanglipmed avatar Dec 17 '20 18:12 yanglipmed

Please use seqSummary() in the SeqArray package instead.

zhengxwen avatar Dec 29 '20 23:12 zhengxwen

Thanks.

yanglipmed avatar Dec 30 '20 15:12 yanglipmed