SCP icon indicating copy to clipboard operation
SCP copied to clipboard

Published 20 hours ago • verified publisher icon zhanghao-njmu

RunDEtest Error

Open nbutyrate opened this issue 2 years ago • 1 comments

Hi I am getting the following error, please help to fix it

DIS_sub <- RunDEtest(srt = DIS_n, group_by = "Cell_Type", fc.threshold = 1, only.pos = FALSE) [2023-08-20 16:44:07] Start DEtest Workers: 14 Error: ! The slot argument of Assays() was deprecated in SeuratObject 5.0.0 and is now defunct. ℹ Please use LayerData() instead.

nbutyrate avatar Aug 20 '23 20:08 nbutyrate

The current version of SCP only supports Seurat versions below 5.0. Once Seurat 5.0 becomes stable, I will consider adding support for it. Therefore, for now, you have two options: either reinstall Seurat version 4.3 or lower, or use renv to create a separate environment with the required dependencies to run SCP.

zhanghao-njmu avatar Sep 01 '23 06:09 zhanghao-njmu