Zak King

fold change results can be confusing

1

If the data changes sign, then the fold and log(fold) say (nd). Explain this in the docs. Also, python docs can be improved: - Annoying, and confusing, to jump back...

Workspaces: Save settings with map (and possibly data)

1

This would make it much easier to jump in and out of analyses. Another option is to save the entire workspace as a new filetype (map, model, and settings). We...

Interop with MATLAB COBRA toolbox

1

This should include: - [ ] Interop with COBRA toolbox map txt file - [ ] Generating Escher maps, Escher-compatible datasets, and JSON models directly from COBRA toolbox If any...

Currently, `null` values evaluate as 0. However, when negative values are allowed for genes, then 0 means significant expression. This is mainly important for applications like expression arrays. For RNA-seq,...

In the corner, as seen on Google Maps and many other tools. 

In search results, the escher homepage doesn't have a description

Highly requested feature

At least programmatic access in the reaction_scale, etc. - [ ] color arrows in both directions

option to interpret no data as a zero value, or possibly an arbitrary user-selected value 

- [ ] Add align and distribute buttons - [ ] Holding shift while dragging should force points to stay lined up (allow movement only along the most-likely axis) -...