jiawen wang

I met this error too ! How to to solve the problem ?

Neither do I ! I doubt whether Strelka is still mainainted. Lots of issues cannot get reply.

I find there are only three genes !

Pherhaps I met this error too, how to solve it ? /home/wangjw/bin/miniconda3/envs/scenic/lib/python3.6/site-packages/pyscenic/diptest.py:30: RuntimeWarning: divide by zero encountered in true_divide slopes = (work_cdf[1:] - work_cdf[0]) / distances /home/wangjw/bin/miniconda3/envs/scenic/lib/python3.6/site-packages/pyscenic/diptest.py:30: RuntimeWarning: divide by...

And, after runing iterativeWGCNA with the following code: iterativeWGCNA -i data.txt --wgcnaParameters maxBlockSize=50000,nthreads=20 --enableWGCNAThreads I got 15 pass (pass1 to pass 15) and more than 1,00 modules in final-membership.txt in...

When combining data from multiple 10x genomics libraries, cellranger recommend equalizing the read depth between libraries before merging, to reduce the batch effect introduced by sequencing, the command is "cellranger...

Now R ggplot2 can set the outline type ! https://ggplot2.tidyverse.org/reference/geom_density.html

It helps a lot, thanks!

Can we use scale_hatch_discrete() in plotnine now ?

Try the following code: # Differential expression and marker genes result = adata.uns['rank_genes_groups'] groups = result['names'].dtype.names df1 = pd.DataFrame({group+'_' + key:result[key][group] for group in groups for key in ['names','scores','logfoldchanges','pvals','pvals_adj']}) df2...