jiawen wang

And how to save the results of run_VIA ? Then we can load it again and plot the figures or do other things.

Hi, I find another problems. The pseudotime colorbar on the right ranges from 0 to 10. It should 0 to 1, is it ? 

Hi, I think you mean this chunk of code of draw_piechart_graph() in plotting_via.py: if type_data == 'pt': pt = via0.scaled_hitting_times # these are the final MCMC refined pt then slightly...

My email is [email protected], could you send your email to me ? I want to send you a ppt, where I revised the plotting code, both the code and the...

I am newcomer of scVI. I notice that your scvi pipeline is different from that of scVI basic tutorial (https://github.com/YosefLab/scVI/blob/master/tests/notebooks/basic_tutorial.ipynb). what's the difference ? Do you make any customized improvements...

I mean the pipeline in this link "https://github.com/vals/Blog/tree/master/180420-scrna-autoencoders". In "https://github.com/vals/Blog/blob/master/181004-integrating-cortex-data/Integrate%20frontal%20cortex%20data.ipynb", the pipeline is the same as that in scVI basic tutorial.

Dear, do you know when to use gene/gene-batch/gene-label/gene-cell as the "param dispersion" in VAE ? :param dispersion: One of the following * ``'gene'`` - dispersion parameter of NB is constant...

@nathanielsimard Hi, I met the same error. Here is the GPU on our CentOS7 server, how to set the backend ? Could you paste the code ? 

I haven't installed Vulkan, but I can use GPU to train the model using Pytorch. I am not sure if I installed OpenGL, how to check whether I can enable...

@antimora @laggui I tried but failed ```rust use burn::backend::wgpu::OpenGl; type MyBackend = Wgpu; ``` displayed the following error:  here is the OpenGL in my centos: ``` [wangjw@localhost machine]$ glxinfo...