test_plot.py::test_plot_predicted_data hangs on M1 macOS

[jeongyoonlee]

Describe the bug test_plot.py::test_plot_predicted_data test hangs on M1 macOS.

To Reproduce Steps to reproduce the behavior: Run pytest tests/orbit/diagnostics/test_plot.py::test_plot_predicted_data on M1 macOS

Expected behavior Test

Screenshots If applicable, add screenshots to help explain your problem.

Environment (please complete the following information):

• OS: [e.g. macOS, Windows, Ubuntu] M1 macOS
• Python Version: [e.g. 3.6, 3.7] 3.8
• Versions of Major Dependencies (pandas, scikit-learn, cython): [e.g. pandas==0.25, scikit-learn==0.22, cython==0.28]

Cython==0.29.30
matplotlib==3.5.2
numpy==1.23.0
opt-einsum==3.3.0
pandas==1.4.3
pyro-api==0.1.2
pyro-ppl==1.8.1
pystan==2.19.1.1
pytest==7.1.2
pytest-cov==3.0.0
scipy==1.8.1
seaborn==0.11.2
statsmodels==0.13.2
torch==1.11.0

Additional context N/A

[edwinnglabs]

Try the steps below. It works for me.

brew install hdf5 netcdf
git clone https://github.com/Unidata/netcdf4-python.git
HDF5_DIR=$(brew --prefix hdf5) pip install ./netcdf4-python

[jeongyoonlee]

Couldn't reproduce the issue anymore.

[f0rodo]

hi @jeongyoonlee how did you install pystan 2.9.11 on your m1? I haven't been able to.