snakemake topic
panoptes
Monitor computational workflows in real time
sv-callers
Snakemake-based workflow for detecting structural variants in genomic data
atacseq_pipeline
Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using...
mapache
mapping pipeline for ancient DNA
FRASER-analysis
Accompanying analysis code for the FRASER manuscript
Iliad
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
kGWASflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
snek5000
:snake: Python framework for Nek5000 :rocket:
cookiecutter-reproducible-research
A cookiecutter template for reproducible research projects using Python, Snakemake, and Pandoc.
CompareM2
🦠📇 Microbial genomes-to-report pipeline