refseq topic
genome_updater
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
ganon
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierar...
referenceseeker
Rapid determination of appropriate reference genomes.
metacache
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
BioProviders
F# library for accessing and manipulating bioinformatic datasets.
Taxor
Fast and space-efficient taxonomic classification of long reads