phylogeny topic
brranching
I can haz all the phylogenies
bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
prophyle
Accurate, resource-frugal and deterministic DNA sequence classifier.
Phylign
Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
homoplasyFinder
A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
taxonium
A tool for exploring very large trees in the browser
MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis comp...
machina
Framework for Metastatic And Clonal History INtegrative Analysis
RBIEN
Tools for accessing the Botanical Information and Ecology Network (BIEN) database