metabolic-models topic
COBRA.tutorials
Repository of tutorials for The COBRA Toolbox
smetana
SMETANA: a tool to analyse interactions in microbial communities
fluctuator
R package to Import and Modify SVG (XML) Graphic Files
isb_course_2022
Materials and presentation for the 2022 ISB Microbiome course.
corda
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
metage2metabo
From annotated genomes to metabolic screening in large scale microbiotas
CNApy
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets,...
psamm
Curation and analysis of metabolic models
KEMET
KEGG Module Evaluation Tool
isb_course_2023
Materials and presentation for the 2023 ISB Microbiome course.