gisaid topic

A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

nextstrain

HDR UK - Resources for 🦠COVID-19 Research

HDRUK

Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

CDCgov