Tobias Rausch

I am sorry, I still need to fix the `N` reference nucleotides. That's on the ToDo list. Just rely on POS and INFO/END for the size of the CNV and...

Tracy requires the original basecall positions from the Applied Biosystem machine. I guess in your case the machine terminated the Autoanalysis prematurely and thus, I would suggest to re-run the...

Good suggestion, thanks. I will try to build a map next week.

I have added a first T2T mappability map [here](https://gear.embl.de/data/delly/).

Your library insert size is way too small. All your reads are completely overlapping and probably full of adapter sequences. DNA was over-fragmented.

I am not sure what the problem is? Can you please elaborate?

Usually it's best to then look at the raw chromatogram trace signal. In [Indigo](https://www.gear-genomics.com/indigo/) the variants are linked to the trace signal plot so you can jump to the position...