Theis Lab

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

theislab

Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics"

theislab

Deep count autoencoder for denoising scRNA-seq data

theislab

This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.

theislab

theislab

R package for single cell and other data analysis using diffusion maps

theislab

Electronic Health Record Analysis with Python.

theislab

Generate cellular maps of differentiation manifolds with complex topologies.

theislab

theislab

Multi-omic single-cell optimal transport tools

theislab