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Published 20 hours ago • verified publisher icon smithlabcode

[BUG] ’ribotricer prepare-orfs‘ Could I use the stringtie output as the reference?

Open punching-samuel opened this issue 10 months ago • 0 comments

  • ribotricer version:1.4.0
  • Python version:3.8.19
  • Operating System:x86_64 GNU/Linux

Description

What I Did

Hi~ I have met the problem that I don't know the format of gtf and fasta files to run 'ribotricer prepare-orfs --gtf {gtf_file} --fasta {transcriptome} --prefix {prefix}' if I supposed to use transcriptome as reference. I have got the stringtie output which comes from my paired bulk data. image image However, it seems not work. image I also use genecode genome and gtf as reference, the projects run without any error.

punching-samuel avatar Jan 03 '25 07:01 punching-samuel