Make plink and bgen readers more consistent

Open eric-czech opened this issue 5 years ago • 3 comments

This would include the following:

[ ] Use the same code for contig interpretation
[ ] Make the docs consistent
[ ] Allow the bgen file to be supplied with no extension?
[ ] Remove the dataframe-specific dtypes from the plink reader field lists
[ ] Update plink test function names
[ ] Remove lock option

Oct 08 '20 20:10 eric-czech

Some of these apply to VCF too.

Oct 12 '20 10:10 tomwhite

This and #629 are the only issues remaining for the 0.3.0 release. @eric-czech do you think you'll have a chance to look at this, or should we go ahead with the release without it?

Jul 21 '21 08:07 tomwhite

I don't think I'll be able to get to it soon, unfortunately. They aren't critical changes so +1 to doing the release without this.

Jul 21 '21 09:07 eric-czech