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Reader does not support cell segmentation of visium hd got after using latest spaceranger version 4

Open rahmaqadeer opened this issue 3 months ago • 3 comments

I am using the visiumhd data from the latest spaceranger pipeline that also contain segmented outputs but the reader doesnot support it unfortunately. It just work with bins Is there any possibility to read the segmented outputs through the reader?

        sdata = visium_hd(
            path=full_path,
            dataset_id=sample_name,
            bin_size=8
        )

rahmaqadeer avatar Aug 22 '25 22:08 rahmaqadeer