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Published 20 hours ago • verified publisher icon scverse

New defaults

Open watiss opened this issue 3 years ago • 1 comments

  • "zinb" vs "nb". Negative binomial seems more sensible of a default. Stipulation of changing will be rerunning all tutorials.
  • encode_covariates=True/False. Typically we set this to True to improve mixing, but would like to check with Pierre since apparently there was a discussion about this before with Pierre and Jonas, and the conclusion was to leave it as False.

watiss avatar Jul 26 '22 19:07 watiss

We can use the ray tune PR to test for the best hyperparameter settings once it gets in: https://github.com/scverse/scvi-tools/pull/1565

justjhong avatar Jul 26 '22 20:07 justjhong